Package index • EDCimport

Reading databases

read_trialmaster(): Read the .zip archive of a TrialMaster export

read_all_xpt(): Read all .xpt files in a directory

Checking databases

edc_data_warn() edc_data_stop() edc_data_warnings(): Standardized warning system

assert_no_duplicate(): Assert that a dataframe has one row per patient

edc_warn_patient_diffs(): Check the validity of the subject ID column

edc_warn_extraction_date(): Warn if extraction is too old

crf_status_plot() edc_pal_crf(): Show the current CRF status distribution

edc_population_plot(): Plot the populations

Project management

edc_new_project(): Create a clinical research project

edc_inform_code(): Shows how many code you wrote

search_for_newer_data(): Search for newer data

save_sessioninfo(): Save sessionInfo() output

Searching databases

find_keyword(): Find a keyword in the whole database

lastnews_table(): Get a table with the latest date for each patient

edc_db_to_excel() edc_browse_excel(): Save the database as an Excel file

get_common_cols() summary(<common_cols>) experimental: Get columns that are common to multiple datasets

Clinical Utils

ae_table_grade_max(): Summary tables for AE by grade max

ae_table_grade_n(): Summary tables for AE

ae_table_soc() as_flextable(<ae_table_soc>): Summary tables for AE by SOC

ae_plot_grade_max(): Graphic representation of AEs by grade max

ae_plot_grade_n(): Graphic representation of AEs

ae_plot_soc(): Graphic representation of AEs by soc (Butterfly plot)

waterfall_plot(): Generate a waterfall plot

Options

edc_options(): Set global options for EDCimport

edc_peek_options(): See which EDCimport option is currently set.

edc_reset_options(): Reset all EDCimport options.

Graphics

edc_swimmerplot(): Swimmer plot of all dates columns

Helpers

unify(): Unify a vector

fct_yesno(): Format factor levels as Yes/No

table_format(): Identify if a dataframe has a long or a wide format

save_plotly(): Save a plotly to an HTML file

get_datasets(): Retrieve the datasets as a list of data.frames

get_meta_cols(): Get columns shared by most datasets

get_subjid_cols() get_crfname_cols(): Get key column names

get_key_cols(): Important column names

split_mixed_datasets(): Split mixed datasets

Lookup Utils

edc_lookup(): Retrieve the lookup table from options

extend_lookup(): Extend the lookup table

build_lookup(): Generate a lookup table

List Utils

load_list(): Load a list in an environment

load_as_list(): Load a .RData file as a list

save_list(): Save a list as .RData file

Examples

edc_example_mixed() edc_example() edc_example_plot() edc_example_ae(): Example databases

Manual correction

manual_correction() reset_manual_correction(): Manual correction