Package index • EDCimport

Reading databases

read_trialmaster(): Read the .zip archive of a TrialMaster export

read_all_xpt(): Read all .xpt files in a directory

read_all_sas(): Read all .sas7bdat files in a directory

read_all_csv(): Read all .csv files in a directory

load_database(): Load a list in an environment

edc_database: EDCimport Database

edc_lookup(): Retrieve the lookup table from options

Modifying databases

edc_unify_subjid(): Harmonize the subject ID of the database

edc_split_mixed(): Split mixed datasets

edc_clean_names(): Clean up the names of all datasets

set_project_name() get_project_name(): Set the project name

Checking databases

edc_data_warn() edc_data_stop() edc_data_warnings(): Standardized warning system

save_edc_data_warnings(): Save EDCimport warning to Excel

assert_no_duplicate(): Assert that a dataframe has one row per patient

edc_warn_patient_diffs(): Check the validity of the subject ID column

edc_warn_extraction_date(): Warn if extraction is too old

Project management

edc_inform_code(): Shows how many code you wrote

search_for_newer_data(): Search for newer data

save_sessioninfo(): Save sessionInfo() output

Searching databases

edc_find_value() edc_find_column(): Search the whole database

lastnews_table(): Get a table with the latest date for each patient

edc_db_to_excel() edc_browse_excel(): Save the database as an Excel file

get_common_cols() summary(<common_cols>) experimental: Get columns that are common to multiple datasets

edc_viewer(): Shiny data explorer

Options

edc_options(): Set global options for EDCimport

edc_peek_options(): See which EDCimport option is currently set

edc_reset_options(): Reset all EDCimport options

Graphics

edc_swimmerplot(): Swimmer plot of all dates columns

edc_crf_plot() edc_pal_crf(): Show the current CRF status distribution

edc_patient_gridplot(): Patient gridplot

edc_population_plot(): Plot the populations

Helpers

unify(): Unify a vector

fct_yesno(): Format factor levels as Yes/No

table_format(): Identify if a dataframe has a long or a wide format

save_plotly(): Save a plotly to an HTML file

select_distinct(): Select only distinct columns

get_datasets(): Retrieve the datasets as a list of data.frames

edc_left_join(): Join within the EDCimport framework

Examples

edc_example(): Example database

Manual correction

manual_correction() reset_manual_correction() experimental: Manual correction